I used to use Obsidian heavily, and it can work well with agents that have local file access. But for agent-heavy workflows, Markdown alone was not enough. I kept needing first-class JSON, better ways to build and inspect structured data, share links, and an API for tools that cannot safely or directly write to local files.
Agentbrain keeps the best part of the vault model, files you own, and makes it purpose-built for AI workflows. Markdown handles docs, process, and human-readable context. JSON handles structured data that agents, other AI systems, and applications can reliably use.